IL_9PKG_216

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AAUUC

Length

16 nucleotides

Bulged bases

9PKG|1|S2|A|628, 9PKG|1|S2|U|630, 9PKG|1|S2|U|631

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|S2|G|611
9PKG|1|S2|U|612
9PKG|1|S2|G|613
9PKG|1|S2|C|614
9PKG|1|S2|C|615
9PKG|1|S2|A|616
9PKG|1|S2|G|617
*
9PKG|1|S2|C|624
9PKG|1|S2|G|625
9PKG|1|S2|G|626
9PKG|1|S2|OMU|627
9PKG|1|S2|A|628
9PKG|1|S2|A|629
9PKG|1|S2|U|630
9PKG|1|S2|U|631
9PKG|1|S2|C|632

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SX

40S ribosomal protein S23

Chain Se

Small ribosomal subunit protein eS30