IL_9PKG_238

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|S2|G|1168
9PKG|1|S2|G|1169
9PKG|1|S2|A|1170
9PKG|1|S2|G|1171
9PKG|1|S2|U|1172
9PKG|1|S2|A|1173
9PKG|1|S2|PSU|1174
9PKG|1|S2|G|1175
*
9PKG|1|S2|U|1186
9PKG|1|S2|G|1187
9PKG|1|S2|A|1188
9PKG|1|S2|A|1189
9PKG|1|S2|A|1190
9PKG|1|S2|C|1191

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23