IL_9PR4_019

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GUAG*CACC

Length

8 nucleotides

Bulged bases

9PR4|1|A|A|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PR4_019 not in the Motif Atlas

Homologous match to IL_1MMS_003

Geometric discrepancy: 0.0904

The information below is about IL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9PR4|1|A|G|2170
9PR4|1|A|U|2171
9PR4|1|A|A|2172
9PR4|1|A|G|2173
*
9PR4|1|A|C|2187
9PR4|1|A|A|2188
9PR4|1|A|C|2189
9PR4|1|A|C|2190

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial