IL_9PR4_033

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

9PR4|1|A|C|2549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PR4_033 not in the Motif Atlas

Homologous match to IL_7A0S_066

Geometric discrepancy: 0.2121

The information below is about IL_7A0S_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

9PR4|1|A|C|2548
9PR4|1|A|C|2549
9PR4|1|A|A|2550
9PR4|1|A|G|2551
*
9PR4|1|A|C|2566
9PR4|1|A|G|2567

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial