IL_9PR4_038

3D structure

PDB id

9PR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In Situ Structure of the Human Mitochondrial Large Subunit 39S in Complex with TACO1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9PR4|1|A|C|2718, 9PR4|1|A|U|3100, 9PR4|1|A|A|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PR4_038 not in the Motif Atlas

Geometric match to IL_8B0X_140

Geometric discrepancy: 0.0749

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

9PR4|1|A|A|2717
9PR4|1|A|C|2718
9PR4|1|A|G|2719
*
9PR4|1|A|C|3099
9PR4|1|A|U|3100
9PR4|1|A|A|3101
9PR4|1|A|U|3102

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial