IL_9PZG_035

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9PZG|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9PZG_035 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.0879

The information below is about IL_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

9PZG|1|A|U|684
9PZG|1|A|G|685
9PZG|1|A|U|686
9PZG|1|A|A|687
9PZG|1|A|G|688
*
9PZG|1|A|C|699
9PZG|1|A|G|700
9PZG|1|A|U|701
9PZG|1|A|A|702
9PZG|1|A|G|703
9PZG|1|A|A|704
9PZG|1|A|G|705
9PZG|1|A|A|706

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain V

Ribosomal RNA small subunit methyltransferase I