IL_9Q1S_050
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAUC*GCGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_050 not in the Motif Atlas
- Homologous match to IL_8GLP_051
- Geometric discrepancy: 0.1229
- The information below is about IL_8GLP_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.3
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q1S|1|5|G|1425
9Q1S|1|5|G|1426
9Q1S|1|5|A|1427
9Q1S|1|5|U|1428
9Q1S|1|5|C|1429
*
9Q1S|1|5|G|1455
9Q1S|1|5|C|1456
9Q1S|1|5|G|1457
9Q1S|1|5|C|1458
9Q1S|1|5|A|1459
9Q1S|1|5|C|1460
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein eL18
- Chain b
- Large ribosomal subunit protein eL29
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