IL_9Q1S_078

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCAUCAG*CUGGAG

Length

14 nucleotides

Bulged bases

9Q1S|1|5|U|1930, 9Q1S|1|5|C|1931, 9Q1S|1|5|G|2055, 9Q1S|1|5|A|2057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|C|1926
9Q1S|1|5|U|1927
9Q1S|1|5|C|1928
9Q1S|1|5|A|1929
9Q1S|1|5|U|1930
9Q1S|1|5|C|1931
9Q1S|1|5|A|1932
9Q1S|1|5|G|1933
*
9Q1S|1|5|C|2053
9Q1S|1|5|U|2054
9Q1S|1|5|G|2055
9Q1S|1|5|G|2056
9Q1S|1|5|A|2057
9Q1S|1|5|G|2058

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain M

60S ribosomal protein L14

Chain O

Large ribosomal subunit protein uL13

Chain S

eL20

Chain m

Large ribosomal subunit protein eL40