IL_9Q1S_136

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_136 not in the Motif Atlas

Geometric match to IL_4YHW_002

Geometric discrepancy: 0.1194

The information below is about IL_4YHW_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9Q1S|1|5|C|4466
9Q1S|1|5|A|4467
9Q1S|1|5|U|4468
*
9Q1S|1|5|G|4489
9Q1S|1|5|C|4490
9Q1S|1|5|G|4491

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain H

60S ribosomal protein L9

Chain V

Large ribosomal subunit protein uL14