IL_9Q2M_245

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9Q2M|1|9|G|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|9|G|1297
9Q2M|1|9|A|1298
9Q2M|1|9|C|1299
9Q2M|1|9|A|1300
9Q2M|1|9|G|1301
9Q2M|1|9|G|1302
9Q2M|1|9|A|1303
9Q2M|1|9|U|1304
9Q2M|1|9|U|1305
9Q2M|1|9|G|1306
*
9Q2M|1|9|C|1325
9Q2M|1|9|U|1326
9Q2M|1|9|C|1327
9Q2M|1|9|G|1328
9Q2M|1|9|A|1329
9Q2M|1|9|U|1330
9Q2M|1|9|U|1331
9Q2M|1|9|C|1332

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

40S ribosomal protein S10

Chain MM

40S ribosomal protein S12

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a