IL_9Q2O_046

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9Q2O|1|5|G|748, 9Q2O|1|5|U|914, 9Q2O|1|5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|G|745
9Q2O|1|5|A|746
9Q2O|1|5|A|747
9Q2O|1|5|G|748
9Q2O|1|5|G|749
9Q2O|1|5|U|750
9Q2O|1|5|G|751
9Q2O|1|5|G|752
*
9Q2O|1|5|U|911
9Q2O|1|5|G|912
9Q2O|1|5|U|913
9Q2O|1|5|U|914
9Q2O|1|5|A|915
9Q2O|1|5|C|916
9Q2O|1|5|A|917
9Q2O|1|5|G|918
9Q2O|1|5|C|919

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

eL20