IL_9Q2O_113

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9Q2O|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|C|2867
9Q2O|1|5|G|2868
9Q2O|1|5|U|2869
9Q2O|1|5|A|2870
9Q2O|1|5|A|2871
9Q2O|1|5|C|2872
*
9Q2O|1|5|G|2877
9Q2O|1|5|G|2878
9Q2O|1|5|A|2879
9Q2O|1|5|U|2880
9Q2O|1|5|A|2881
9Q2O|1|5|A|2882
9Q2O|1|5|G|2883

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

60S ribosomal protein L37a