IL_9Q2O_230
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2O_230 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3717
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9Q2O|1|9|C|1098
9Q2O|1|9|G|1099
9Q2O|1|9|A|1100
9Q2O|1|9|U|1101
9Q2O|1|9|G|1102
9Q2O|1|9|C|1103
*
9Q2O|1|9|G|1129
9Q2O|1|9|G|1130
9Q2O|1|9|G|1131
9Q2O|1|9|C|1132
9Q2O|1|9|A|1133
9Q2O|1|9|G|1134
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain AA
- 40S_SA_C domain-containing protein
- Chain BB
- 40S ribosomal protein S3a
- Chain NN
- 40S ribosomal protein S13
- Chain RR
- 40S ribosomal protein S17
- Chain aa
- eS26
- Chain bb
- 40S ribosomal protein S27
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