IL_9Q2P_074
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGGGCC*GAUCUC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2P_074 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3877
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9Q2P|1|5|G|1758
9Q2P|1|5|G|1759
9Q2P|1|5|G|1760
9Q2P|1|5|G|1761
9Q2P|1|5|C|1762
9Q2P|1|5|C|1763
*
9Q2P|1|5|G|1769
9Q2P|1|5|A|1770
9Q2P|1|5|U|1771
9Q2P|1|5|C|1772
9Q2P|1|5|U|1773
9Q2P|1|5|C|1774
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain I
- Ribosomal protein L10
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