IL_9Q2P_149
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2P_149 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.1207
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.1
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9Q2P|1|5|C|4596
9Q2P|1|5|U|4597
9Q2P|1|5|C|4598
9Q2P|1|5|A|4599
9Q2P|1|5|G|4600
9Q2P|1|5|U|4601
9Q2P|1|5|A|4602
9Q2P|1|5|C|4603
*
9Q2P|1|5|G|4608
9Q2P|1|5|G|4609
9Q2P|1|5|A|4610
9Q2P|1|5|A|4611
9Q2P|1|5|C|4612
9Q2P|1|5|C|4613
9Q2P|1|5|G|4614
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain B
- 60S ribosomal protein L3
- Chain EF
- Elongation factor 1-alpha 1
- Chain H
- 60S ribosomal protein L9
- Chain V
- Large ribosomal subunit protein uL14
- Chain m
- Large ribosomal subunit protein eL40
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