IL_9Q3R_034

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3R_034 not in the Motif Atlas

Homologous match to IL_8B0X_098

Geometric discrepancy: 0.0513

The information below is about IL_8B0X_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46868.2

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

9Q3R|1|A|U|1004
9Q3R|1|A|C|1005
9Q3R|1|A|C|1006
9Q3R|1|A|C|1007
9Q3R|1|A|A|1008
9Q3R|1|A|A|1009
9Q3R|1|A|A|1010
9Q3R|1|A|G|1011
*
9Q3R|1|A|C|1150
9Q3R|1|A|A|1151

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL13

Chain S

50S ribosomal protein L20