IL_9Q3R_037
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9Q3R|1|A|A|1127, 9Q3R|1|A|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3R_037 not in the Motif Atlas
- Homologous match to IL_8B0X_101
- Geometric discrepancy: 0.0377
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9Q3R|1|A|G|1024
9Q3R|1|A|G|1025
9Q3R|1|A|G|1026
9Q3R|1|A|A|1027
9Q3R|1|A|A|1028
9Q3R|1|A|A|1029
9Q3R|1|A|C|1030
*
9Q3R|1|A|G|1124
9Q3R|1|A|G|1125
9Q3R|1|A|A|1126
9Q3R|1|A|A|1127
9Q3R|1|A|G|1128
9Q3R|1|A|A|1129
9Q3R|1|A|U|1130
9Q3R|1|A|G|1131
9Q3R|1|A|U|1132
9Q3R|1|A|A|1133
9Q3R|1|A|A|1134
9Q3R|1|A|C|1135
9Q3R|1|A|G|1136
9Q3R|1|A|G|1137
9Q3R|1|A|G|1138
9Q3R|1|A|G|1139
9Q3R|1|A|C|1140
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain D
- 50S ribosomal protein L3
- Chain L
- Large ribosomal subunit protein uL13
- Chain O
- Large ribosomal subunit protein uL16
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