IL_9Q3R_052

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9Q3R|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3R_052 not in the Motif Atlas

Homologous match to IL_8B0X_114

Geometric discrepancy: 0.0918

The information below is about IL_8B0X_114

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9Q3R|1|A|C|1417
9Q3R|1|A|G|1418
9Q3R|1|A|A|1419
9Q3R|1|A|A|1420
9Q3R|1|A|G|1421
*
9Q3R|1|A|C|1577
9Q3R|1|A|U|1578
9Q3R|1|A|A|1579
9Q3R|1|A|A|1580
9Q3R|1|A|G|1581

Current chains

Chain A

23S Ribosomal RNA

Nearby chains