IL_9Q3R_102
3D structure
- PDB id
- 9Q3R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q3R_102 not in the Motif Atlas
- Homologous match to IL_8B0X_161
- Geometric discrepancy: 0.0536
- The information below is about IL_8B0X_161
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Q3R|1|A|C|2652
9Q3R|1|A|U|2653
9Q3R|1|A|A|2654
9Q3R|1|A|G|2655
9Q3R|1|A|U|2656
9Q3R|1|A|A|2657
9Q3R|1|A|C|2658
*
9Q3R|1|A|G|2663
9Q3R|1|A|G|2664
9Q3R|1|A|A|2665
9Q3R|1|A|C|2666
9Q3R|1|A|C|2667
9Q3R|1|A|G|2668
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL6
- Chain z
- Elongation factor Tu 2
Coloring options: