IL_9Q3R_140

3D structure

PDB id

9Q3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome bound to mRNA, P-site fMet-tRNAfMet, glycyl-tRNAGly in A/T conformation, EF-Tu-GDPCP, and bottromycin at 1.99A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q3R_140 not in the Motif Atlas

Homologous match to IL_8B0X_023

Geometric discrepancy: 0.0724

The information below is about IL_8B0X_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9Q3R|1|a|C|504
9Q3R|1|a|G|505
9Q3R|1|a|G|506
9Q3R|1|a|C|507
9Q3R|1|a|U|508
9Q3R|1|a|A|509
9Q3R|1|a|A|510
9Q3R|1|a|C|511
*
9Q3R|1|a|G|540
9Q3R|1|a|G|541

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12