IL_9Q6U_177

3D structure

PDB id

9Q6U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-26 triazole derivative and protein Y at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

9Q6U|1|2A|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q6U_177 not in the Motif Atlas

Homologous match to IL_7A0S_004

Geometric discrepancy: 0.2098

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9Q6U|1|2A|G|81
9Q6U|1|2A|G|82
9Q6U|1|2A|G|83
9Q6U|1|2A|A|84
9Q6U|1|2A|G|85
*
9Q6U|1|2A|C|97
9Q6U|1|2A|G|98
9Q6U|1|2A|U|99
9Q6U|1|2A|G|100
9Q6U|1|2A|G|102
9Q6U|1|2A|A|103
9Q6U|1|2A|U|104
9Q6U|1|2A|C|105

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 2Y

50S ribosomal protein L24