3D structure

PDB id
9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
9Q87|1|A|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9Q87_029 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0782
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

9Q87|1|A|U|605
9Q87|1|A|G|606
9Q87|1|A|A|607
9Q87|1|A|A|608
9Q87|1|A|A|609
9Q87|1|A|U|610
9Q87|1|A|C|611
9Q87|1|A|C|612
*
9Q87|1|A|G|628
9Q87|1|A|A|629
9Q87|1|A|A|630
9Q87|1|A|C|631
9Q87|1|A|U|632
9Q87|1|A|G|633

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4
Chain H
Small ribosomal subunit protein uS8
Chain P
Small ribosomal subunit protein bS16
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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