IL_9Q87_169
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 9Q87|1|a|G|2784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q87_169 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.0537
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9Q87|1|a|C|2640
9Q87|1|a|U|2641
9Q87|1|a|G|2642
9Q87|1|a|A|2643
9Q87|1|a|G|2644
*
9Q87|1|a|C|2778
9Q87|1|a|G|2779
9Q87|1|a|A|2780
9Q87|1|a|G|2781
9Q87|1|a|A|2782
9Q87|1|a|U|2783
9Q87|1|a|G|2784
9Q87|1|a|A|2785
9Q87|1|a|G|2786
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain i
- Large ribosomal subunit protein uL13
Coloring options: