IL_9QEG_005

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

9QEG|1|A|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_005 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.1166

The information below is about IL_9DFE_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_54465.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

9QEG|1|A|G|81
9QEG|1|A|G|82
9QEG|1|A|G|83
9QEG|1|A|A|84
9QEG|1|A|G|85
*
9QEG|1|A|C|97
9QEG|1|A|U|98
9QEG|1|A|U|99
9QEG|1|A|U|100
9QEG|1|A|G|101
9QEG|1|A|A|102
9QEG|1|A|U|103
9QEG|1|A|C|104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL24

Chain W

Large ribosomal subunit protein uL29