IL_9QEG_018

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9QEG|1|A|G|846, 9QEG|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_018 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0616

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9QEG|1|A|G|719
9QEG|1|A|A|720
9QEG|1|A|A|721
9QEG|1|A|A|722
9QEG|1|A|C|723
*
9QEG|1|A|G|844
9QEG|1|A|A|845
9QEG|1|A|G|846
9QEG|1|A|A|847
9QEG|1|A|U|848
9QEG|1|A|A|849
9QEG|1|A|G|850
9QEG|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain J

Large ribosomal subunit protein uL15