IL_9QEG_041

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9QEG|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_041 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0746

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9QEG|1|A|C|1246
9QEG|1|A|G|1247
9QEG|1|A|U|1248
9QEG|1|A|U|1249
9QEG|1|A|G|1250
9QEG|1|A|A|1251
9QEG|1|A|A|1252
9QEG|1|A|G|1253
*
9QEG|1|A|U|1272
9QEG|1|A|G|1273
9QEG|1|A|G|1274
9QEG|1|A|A|1275
9QEG|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein bL20