IL_9QEG_055

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_055 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0471

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9QEG|1|A|G|1710
9QEG|1|A|G|1711
9QEG|1|A|A|1712
9QEG|1|A|A|1713
9QEG|1|A|C|1714
9QEG|1|A|U|1715
9QEG|1|A|C|1716
9QEG|1|A|G|1717
9QEG|1|A|G|1718
*
9QEG|1|A|C|2017
9QEG|1|A|U|2018
9QEG|1|A|G|2019
9QEG|1|A|U|2020
9QEG|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain I

Large ribosomal subunit protein uL14