IL_9QEG_068

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9QEG|1|A|C|2082, 9QEG|1|A|U|2640, 9QEG|1|A|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_068 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.0896

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

9QEG|1|A|A|2081
9QEG|1|A|C|2082
9QEG|1|A|G|2083
*
9QEG|1|A|C|2639
9QEG|1|A|U|2640
9QEG|1|A|A|2641
9QEG|1|A|U|2642

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain Q

Large ribosomal subunit protein uL22

Chain Z

Large ribosomal subunit protein bL32