IL_9QEG_071

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

9QEG|1|A|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_071 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.0978

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9QEG|1|A|U|2108
9QEG|1|A|A|2109
9QEG|1|A|G|2110
*
9QEG|1|A|C|2263
9QEG|1|A|G|2264
9QEG|1|A|G|2265
9QEG|1|A|G|2266

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 11

E-site tRNA molecule

Chain C

Large ribosomal subunit protein uL2

Chain V

Large ribosomal subunit protein bL28