IL_9QEG_089

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

9QEG|1|A|U|2716, 9QEG|1|A|A|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_089 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.0738

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9QEG|1|A|U|2714
9QEG|1|A|G|2715
9QEG|1|A|U|2716
9QEG|1|A|A|2717
9QEG|1|A|C|2718
*
9QEG|1|A|G|2745
9QEG|1|A|G|2746
9QEG|1|A|U|2747
9QEG|1|A|A|2748
9QEG|1|A|G|2749

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain L

Large ribosomal subunit protein bL17

Chain N

Large ribosomal subunit protein bL19