IL_9QEG_103

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9QEG|1|Aa|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_103 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1232

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9QEG|1|Aa|G|147
9QEG|1|Aa|G|148
9QEG|1|Aa|A|149
9QEG|1|Aa|U|150
9QEG|1|Aa|A|151
9QEG|1|Aa|A|152
9QEG|1|Aa|C|153
*
9QEG|1|Aa|G|168
9QEG|1|Aa|C|169
9QEG|1|Aa|U|170
9QEG|1|Aa|A|171
9QEG|1|Aa|A|172
9QEG|1|Aa|U|173
9QEG|1|Aa|A|174
9QEG|1|Aa|C|175

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain At

Small ribosomal subunit protein bS20