IL_9QEG_113
3D structure
- PDB id
- 9QEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9QEG|1|Aa|A|540, 9QEG|1|Aa|U|542, 9QEG|1|Aa|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QEG_113 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.2256
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9QEG|1|Aa|G|523
9QEG|1|Aa|U|524
9QEG|1|Aa|G|525
9QEG|1|Aa|C|526
9QEG|1|Aa|C|527
9QEG|1|Aa|A|528
9QEG|1|Aa|G|529
*
9QEG|1|Aa|C|536
9QEG|1|Aa|G|537
9QEG|1|Aa|G|538
9QEG|1|Aa|U|539
9QEG|1|Aa|A|540
9QEG|1|Aa|A|541
9QEG|1|Aa|U|542
9QEG|1|Aa|A|543
9QEG|1|Aa|C|544
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain 9
- A-site tRNA molecule
- Chain Ac
- Small ribosomal subunit protein uS3
- Chain Ad
- Small ribosomal subunit protein uS4
- Chain Al
- Small ribosomal subunit protein uS12
- Chain d
- mRNA molecule
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