IL_9QEG_118

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GU*GUC

Length

5 nucleotides

Bulged bases

9QEG|1|Aa|U|641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_118 not in the Motif Atlas

Geometric match to IL_2A64_003

Geometric discrepancy: 0.3895

The information below is about IL_2A64_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9QEG|1|Aa|G|612
9QEG|1|Aa|U|613
*
9QEG|1|Aa|G|640
9QEG|1|Aa|U|641
9QEG|1|Aa|C|642

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ah

Small ribosomal subunit protein uS8

Chain Aq

Small ribosomal subunit protein uS17