IL_9QEG_122

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AAGAG*UGGU

Length

9 nucleotides

Bulged bases

9QEG|1|Aa|A|673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_122 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0914

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9QEG|1|Aa|A|670
9QEG|1|Aa|A|671
9QEG|1|Aa|G|672
9QEG|1|Aa|A|673
9QEG|1|Aa|G|674
*
9QEG|1|Aa|U|748
9QEG|1|Aa|G|749
9QEG|1|Aa|G|750
9QEG|1|Aa|U|751

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Af

Small ribosomal subunit protein bS6

Chain Ao

Small ribosomal subunit protein uS15

Chain Ar

Small ribosomal subunit protein bS18