IL_9QEG_130

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9QEG|1|Aa|C|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_130 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1069

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9QEG|1|Aa|G|942
9QEG|1|Aa|C|943
9QEG|1|Aa|A|944
*
9QEG|1|Aa|U|1390
9QEG|1|Aa|U|1391
9QEG|1|Aa|C|1392
9QEG|1|Aa|C|1393
9QEG|1|Aa|C|1394

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain Ag

Small ribosomal subunit protein uS7

Chain Ai

Small ribosomal subunit protein uS9