IL_9QEG_133

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9QEG|1|Aa|C|1065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_133 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1617

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

9QEG|1|Aa|U|1063
9QEG|1|Aa|G|1064
9QEG|1|Aa|C|1065
9QEG|1|Aa|A|1066
9QEG|1|Aa|U|1067
*
9QEG|1|Aa|A|1214
9QEG|1|Aa|U|1215
9QEG|1|Aa|G|1216

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain 9

A-site tRNA molecule

Chain Ac

Small ribosomal subunit protein uS3

Chain Aj

Small ribosomal subunit protein uS10

Chain An

Small ribosomal subunit protein uS14B