IL_9QEG_134

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9QEG|1|Aa|C|1210, 9QEG|1|Aa|A|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_134 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.0783

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9QEG|1|Aa|G|1068
9QEG|1|Aa|G|1069
*
9QEG|1|Aa|U|1209
9QEG|1|Aa|C|1210
9QEG|1|Aa|A|1211
9QEG|1|Aa|U|1212
9QEG|1|Aa|C|1213

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ac

Small ribosomal subunit protein uS3

Chain Aj

Small ribosomal subunit protein uS10

Chain An

Small ribosomal subunit protein uS14B