IL_9QEG_137

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

9QEG|1|Aa|U|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_137 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2155

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9QEG|1|Aa|G|1135
9QEG|1|Aa|U|1136
9QEG|1|Aa|U|1137
9QEG|1|Aa|G|1138
*
9QEG|1|Aa|C|1155
9QEG|1|Aa|A|1156
9QEG|1|Aa|C|1157
9QEG|1|Aa|U|1158
9QEG|1|Aa|C|1159

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

Small ribosomal subunit protein uS9

Chain Aj

Small ribosomal subunit protein uS10