IL_9QEG_139

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_139 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1024

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9QEG|1|Aa|C|1313
9QEG|1|Aa|G|1314
9QEG|1|Aa|G|1315
9QEG|1|Aa|A|1316
9QEG|1|Aa|U|1317
9QEG|1|Aa|U|1318
*
9QEG|1|Aa|A|1339
9QEG|1|Aa|U|1340
9QEG|1|Aa|G|1341
9QEG|1|Aa|A|1342
9QEG|1|Aa|A|1343
9QEG|1|Aa|G|1344

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Am

Small ribosomal subunit protein uS13