IL_9QEG_140

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9QEG|1|Aa|C|1410, 9QEG|1|Aa|A|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_140 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.0988

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9QEG|1|Aa|C|1409
9QEG|1|Aa|C|1410
9QEG|1|Aa|G|1411
*
9QEG|1|Aa|C|1512
9QEG|1|Aa|A|1513
9QEG|1|Aa|A|1514
9QEG|1|Aa|G|1515

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain Ae

Small ribosomal subunit protein uS5

Chain d

mRNA molecule