IL_9QEG_141

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_141 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0669

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9QEG|1|Aa|G|1411
9QEG|1|Aa|4OC|1412
9QEG|1|Aa|C|1413
9QEG|1|Aa|C|1414
*
9QEG|1|Aa|G|1508
9QEG|1|Aa|UR3|1509
9QEG|1|Aa|A|1510
9QEG|1|Aa|A|1511
9QEG|1|Aa|C|1512

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain d

mRNA molecule