IL_9QEG_147

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CCGAAG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEG_147 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3822

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.1

Basepair signature

cWW-cWW-L-R-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9QEG|1|Aa|C|1440
9QEG|1|Aa|C|1441
9QEG|1|Aa|G|1442
9QEG|1|Aa|A|1443
9QEG|1|Aa|A|1444
9QEG|1|Aa|G|1445
*
9QEG|1|Aa|C|1477
9QEG|1|Aa|G|1478
9QEG|1|Aa|A|1479
9QEG|1|Aa|A|1480
9QEG|1|Aa|G|1481

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain At

Small ribosomal subunit protein bS20

Chain N

Large ribosomal subunit protein bL19