IL_9QEH_035

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9QEH|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_035 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0451

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9QEH|1|A|U|1062
9QEH|1|A|U|1063
9QEH|1|A|A|1064
9QEH|1|A|A|1065
9QEH|1|A|G|1066
9QEH|1|A|U|1067
9QEH|1|A|G|1068
*
9QEH|1|A|C|1184
9QEH|1|A|U|1185
9QEH|1|A|A|1186
9QEH|1|A|A|1187
9QEH|1|A|A|1188

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain H

Large ribosomal subunit protein uL13