IL_9QEH_060

3D structure

PDB id

9QEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

9QEH|1|A|U|1828, 9QEH|1|A|U|1843, 9QEH|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QEH_060 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1026

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9QEH|1|A|U|1825
9QEH|1|A|G|1826
9QEH|1|A|C|1827
9QEH|1|A|U|1828
9QEH|1|A|A|1829
9QEH|1|A|A|1830
9QEH|1|A|A|1831
*
9QEH|1|A|U|1840
9QEH|1|A|G|1841
9QEH|1|A|A|1842
9QEH|1|A|U|1843
9QEH|1|A|G|1844
9QEH|1|A|U|1845
9QEH|1|A|A|1846
9QEH|1|A|U|1847
9QEH|1|A|A|1848

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2