IL_9QIW_006

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUCAGUAA*UGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_006 not in the Motif Atlas

Geometric match to IL_1JBR_001

Geometric discrepancy: 0.1299

The information below is about IL_1JBR_001

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9QIW|1|L5|C|81
9QIW|1|L5|U|82
9QIW|1|L5|C|83
9QIW|1|L5|A|84
9QIW|1|L5|G|85
9QIW|1|L5|U|86
9QIW|1|L5|A|87
9QIW|1|L5|A|88
*
9QIW|1|L5|U|96
9QIW|1|L5|G|97
9QIW|1|L5|A|98
9QIW|1|L5|A|99
9QIW|1|L5|C|100
9QIW|1|L5|A|101
9QIW|1|L5|G|102

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a