3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
9QIW|1|L5|C|340
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_014 not in the Motif Atlas
Geometric match to IL_9DFE_073
Geometric discrepancy: 0.2328
The information below is about IL_9DFE_073
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_24264.1
Basepair signature
cWW-L-R-L-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

9QIW|1|L5|C|339
9QIW|1|L5|C|340
9QIW|1|L5|G|341
9QIW|1|L5|G|342
*
9QIW|1|L8|C|32
9QIW|1|L8|G|33

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LL
60S ribosomal protein L13
Chain LN
60S ribosomal protein L15
Chain Lj
Large ribosomal subunit protein eL37

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2282 s