IL_9QIW_035

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9QIW|1|L5|G|748, 9QIW|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_035 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1422

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9QIW|1|L5|G|745
9QIW|1|L5|A|746
9QIW|1|L5|A|747
9QIW|1|L5|G|748
9QIW|1|L5|G|749
9QIW|1|L5|U|750
9QIW|1|L5|G|751
9QIW|1|L5|G|752
*
9QIW|1|L5|U|911
9QIW|1|L5|G|912
9QIW|1|L5|U|913
9QIW|1|L5|U|914
9QIW|1|L5|A|915
9QIW|1|L5|C|916
9QIW|1|L5|A|917
9QIW|1|L5|G|918
9QIW|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a