IL_9QIW_046

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

9QIW|1|L5|A|1650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QIW_046 not in the Motif Atlas

Homologous match to IL_8P9A_256

Geometric discrepancy: 0.4888

The information below is about IL_8P9A_256

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

9QIW|1|L5|G|1522
9QIW|1|L5|A|1523
9QIW|1|L5|A|1524
9QIW|1|L5|A|1525
9QIW|1|L5|G|1526
*
9QIW|1|L5|C|1648
9QIW|1|L5|U|1649
9QIW|1|L5|A|1650
9QIW|1|L5|G|1651
9QIW|1|L5|U|1652
9QIW|1|L5|A|1653
9QIW|1|L5|G|1654
9QIW|1|L5|C|1655

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain Lj

Large ribosomal subunit protein eL37