3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGC*GG
Length
5 nucleotides
Bulged bases
9QIW|1|L5|G|1919
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_059 not in the Motif Atlas
Geometric match to IL_8TSV_002
Geometric discrepancy: 0.3455
The information below is about IL_8TSV_002
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

9QIW|1|L5|U|1918
9QIW|1|L5|G|1919
9QIW|1|L5|C|1920
*
9QIW|1|L5|G|2063
9QIW|1|L5|G|2064

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LF
Large ribosomal subunit protein uL30
Chain LO
60S ribosomal protein L13a
Chain LS
60S ribosomal protein L18a
Chain Lf
60S ribosomal protein L35a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1583 s