3D structure

PDB id
9QIW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human pre-60S - State 3
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UAUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
9QIW|1|L5|A|1960
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9QIW_063 not in the Motif Atlas
Homologous match to IL_8CRE_057
Geometric discrepancy: 0.2134
The information below is about IL_8CRE_057
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

9QIW|1|L5|U|1957
9QIW|1|L5|A|1958
9QIW|1|L5|U|1959
9QIW|1|L5|A|1960
9QIW|1|L5|G|1961
9QIW|1|L5|A|1962
9QIW|1|L5|C|1963
9QIW|1|L5|A|1964
9QIW|1|L5|G|1965
*
9QIW|1|L5|C|2022
9QIW|1|L5|C|2023
9QIW|1|L5|G|2024
9QIW|1|L5|A|2025
9QIW|1|L5|A|2026

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CF
mRNA turnover protein 4 homolog
Chain LS
60S ribosomal protein L18a

Coloring options:


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